rs6269117 SNP Detail

Summary

• ID
  rs6269117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95162274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCACACTG TCTCCCATGT
  AGCCATGGGA ACCACAGTGC TAACTAATTA GTTTACTGAC CATCTCATTC TCATTCTGCT
  CATTTTAATG AGCTCCTTCC TCACATCCAT TTGCTCAGAG AAGATGTTTA GGAATCCTTC
  ATCCTTTTGC CACTGAGGAA AGCCTCCGTC GTTAGTTTTC TGGTAACAGT TGAGCTGAAC
  Y
  CTGGCTAAGC TACCTGACCT CCGTCAGGAG GATGGACACA CAACAGGCCT TTGCTTCTCG
  TGTCCTGCTT GTACCGTCAG TAAGTCAGTC AGCTCCGGCT TTACAAGGGC ACGCAGGCTA
  ACAGCTTGGC AGAAGAAGCT GCCAGGCAGC TCGTTTTGTC ACTGAGTGAT TCAAAGGAAC
  ATATTTTTAT TGATGGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8674935	WI_WGS_13_92364400	WI	MOUSE	f	SNP							T		C
ss49123074	NES12476750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	C		T	T	C	T
ss144969098	ENSMUSSNP7075835	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6269117					SNP	T	T	T	T	T	T	T	C	C	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49123074	NES12476750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95162274 () rs orientation: forward

Symbol	Name	Function Class
Gm48420	predicted gene, 48420	866 bp downstream
Pde8b	phosphodiesterase 8B	within coordinates