rs6269134 SNP Detail

Summary

• ID
  rs6269134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95162291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGCCATG GGAACCACAG
  TGCTAACTAA TTAGTTTACT GACCATCTCA TTCTCATTCT GCTCATTTTA ATGAGCTCCT
  TCCTCACATC CATTTGCTCA GAGAAGATGT TTAGGAATCC TTCATCCTTT TGCCACTGAG
  GAAAGCCTCC GTCGTTAGTT TTCTGGTAAC AGTTGAGCTG AACTCTGGCT AAGCTACCTG
  R
  CCTCCGTCAG GAGGATGGAC ACACAACAGG CCTTTGCTTC TCGTGTCCTG CTTGTACCGT
  CAGTAAGTCA GTCAGCTCCG GCTTTACAAG GGCACGCAGG CTAACAGCTT GGCAGAAGAA
  GCTGCCAGGC AGCTCGTTTT GTCACTGAGT GATTCAAAGG AACATATTTT TATTGATGGA
  ATATAACTTT CTGGAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss8674952	WI_WGS_13_92364417	WI	MOUSE	f	SNP				A		G
ss49123073	NES12476751	PERLEGEN	MM_PANEL2	f	SNP		A	A		G			G	G		G
ss144969103	ENSMUSSNP5761506	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A			G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs6269134					SNP	A	A	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49123073	NES12476751	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95162291 () rs orientation: forward

Symbol	Name	Function Class
Gm48420	predicted gene, 48420	883 bp downstream
Pde8b	phosphodiesterase 8B	within coordinates