rs6269443 SNP Detail

Summary

• ID
  rs6269443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8107925 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTGGAAGCC GATGCTTCTT
  TACAGCTCTT CTCTACTTCC TTTGTGGGTA AATGATTAAT TATCGAATTC AACTGAAAGT
  AGCTAACTAT CATAATTGGG CCATAAAATA ATTAATTACT AATATTTGTC TTTAGGTTAG
  GCAAGCAGAG GTTTTATGTT CAGATCTTGA ATTTCTTCTC TGTAAGCAGC CCTTGTTCTA
  W
  CCTGACAATA CAAGTGAGGA GGTATACACT TTGTAGATCT TCAAAGTATA TTTATATTCC
  CCCTTTGGGT CAGTCTAATC CCAGTCCAAT CACAAGCTTT GAACTGATCT ATTATTGATA
  CAGGCAATAC TCTGTCCAAA TTTGTCCAGA TCTAAAATAA AGACTGTTTT AGTCTTCCTT
  TCCTTTTACC TTCTTTCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8675261	WI_WGS_5_5803360	WI	MOUSE	f	SNP	T	A
ss321459860	CHEV_5_8057925	CHEVERUD	SCREENING_POP	r	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6269443					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8107925 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	1017 bp distal
Sri	sorcin	within coordinates
Tssr45107	transcription start site region 45107	1374 bp downstream
Tssr45108	transcription start site region 45108	1340 bp downstream