rs6269460 SNP Detail

Summary

• ID
  rs6269460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19570837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAAGAC GTTTTTAAGA
  GTGAGATGTG TCTTAAATGG CAGTCTGAGA GCCCTGGTAT TTATAGTCTT AAGGGGGTGT
  GTTATCTTAA CTTTCAGATG TCAATCTTCG TTAGAAAATA AGTTCCAGCA CCAACTCTAC
  TTGTGTACTA GTTCATGTTT CTTAAGGTGA CTCTCAGACA GCCCTTGGCT CTCTTACAGC
  R
  TAGGTTATAT GGAACTCAAA ATGGAATCAG TGCTATCAAA GCATAGTTAC ATTAATCATA
  GTTCAAATGC CAATATACTT AGATCGACAA AAGTCTTAAC ATAGCAAAAC ACACACCCCG
  ACAGGAAACA GGTGACTCAC ATCATAGGGG CTAAGGAGGC CCAATGATGG GAAGACCTAG
  GAAGGTGTGG TTCTGCTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8675278	WI_WGS_2_19716605	WI	MOUSE	f	SNP							G		A
ss37364102	NES08783821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6269460					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364102	NES08783821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19570837 () rs orientation: forward

Symbol	Name	Function Class
Rr552495	regulatory region 552495	1613 bp proximal