rs6269639 SNP Detail

Summary

• ID
  rs6269639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95162411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCCTTT TGCCACTGAG
  GAAAGCCTCC GTCGTTAGTT TTCTGGTAAC AGTTGAGCTG AACTCTGGCT AAGCTACCTG
  ACCTCCGTCA GGAGGATGGA CACACAACAG GCCTTTGCTT CTCGTGTCCT GCTTGTACCG
  TCAGTAAGTC AGTCAGCTCC GGCTTTACAA GGGCACGCAG GCTAACAGCT TGGCAGAAGA
  R
  GCTGCCAGGC AGCTCGTTTT GTCACTGAGT GATTCAAAGG AACATATTTT TATTGATGGA
  ATATAACTTT CTGGAAATGA AGTTTGGGGG CGTGCATGAT TCAGGTCGGA AATTAAACAC
  CATCCCCTTA GTGTCCGCCT GTCATTTCCA TTTTAAAGGA AACCCTCTTG CTTGTTCTAC
  CCTGTGATTC ACAGTGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8675457	WI_WGS_13_92364537	WI	MOUSE	f	SNP		A	G
ss144969107	ENSMUSSNP5240238	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6269639					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95162411 () rs orientation: forward

Symbol	Name	Function Class
Gm48420	predicted gene, 48420	1003 bp downstream
Pde8b	phosphodiesterase 8B	within coordinates