rs6269879 SNP Detail

Summary

• ID
  rs6269879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8107866 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGAT CTTCAAAGTA TATTTATATT
  Y
  CCCCTTTGGG TCAGTCTAAT CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8675697	WI_WGS_5_5803419	WI	MOUSE	f	SNP	C	T
ss321459859	CHEV_5_8057866	CHEVERUD	SCREENING_POP	r	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6269879					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8107866 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	958 bp distal
Sri	sorcin	within coordinates
Tssr45107	transcription start site region 45107	1315 bp downstream
Tssr45108	transcription start site region 45108	1281 bp downstream