rs6269890 SNP Detail

Summary

• ID
  rs6269890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26751862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACACCA GGAACCTAGC
  AACTGGGGCA CTGAAGCAGA AGCATCATTG AAAGCATGAG GCCATCCTGG GCTACGGAGT
  AAGAGCCTCT GTCAACAAAA CAAAACAAAA CAAAACAAAA CAAAACAAAA CAAAACACAC
  CAAAAAGCAG AAGTCAGAGA TAAGGCACTA AAGAGAGCTG TGACCACAGC AGTGTCCCCA
  M
  GTGCAAACCA CAGCTGGCTT CCTCTCACTC TGCTCAGACC TCTTCACCTC ACCTAGCTCT
  GCAGTCCCCT CCTGCCCGGT GCTTGTCCTT GTGTGGCTCC TGCGGATGAG CCAGCCTCAG
  CCTCATTCAT ATCCAGACTC TGGCTCCAGG GCCACTGCGC TCACCCCAGC CTCTGTTTTC
  CCAAGAACTC CAACCTTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8675708	WI_WGS_17_25717800	WI	MOUSE	f	SNP							C		A
ss60554846	NES16569773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6269890					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554846	NES16569773	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26751862 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	1049 bp downstream
Tssr143240	transcription start site region 143240	2 bp downstream
Tssr143241	transcription start site region 143241	7 bp upstream
Tssr143242	transcription start site region 143242	21 bp upstream
Tssr143243	transcription start site region 143243	46 bp upstream
Tssr143244	transcription start site region 143244	77 bp upstream
Tssr143245	transcription start site region 143245	1237 bp upstream
Tssr146959	transcription start site region 146959	1191 bp upstream
Tssr146960	transcription start site region 146960	271 bp upstream
Tssr146961	transcription start site region 146961	241 bp upstream
Tssr146962	transcription start site region 146962	212 bp upstream
Tssr146963	transcription start site region 146963	165 bp upstream