rs6270111 SNP Detail

Summary

• ID
  rs6270111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37654621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAGTAA AGGTACTTTC
  GAAGGCCATG TAGCCTCATC CAGCACAATT TCAGGGTTCA CCCCTCCCAC CCTATCAAAT
  CAGTAATCTG TAAACCAAAC AAAGCTCAGA CTCACTTCAT TTACCAACTC TCAGTTTAGA
  TACACTATTG GCAAAAGTCT GTTTCCCTAC CAGTGTGTTC CATGAGACCT CAAGTTTTAA
  W
  TAAGATTGTT GATAAAAAAA TAAATAAATA ACTCGGAATT TAAATTACCA ACGATAAACT
  CTGTAAAGTC TCGGATTTTT GTTTTGTTTT TTTTTACTTA ACCCGCGGGA CAGTTTTTAG
  ACAGCACTGG CAAATACCTG TCATTCCGGT GCTCTGGAGG CTAAGGCTGG AGTATACCTA
  GTTTGAGGCC AGGCTGGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8675929	WI_WGS_X_24147318	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6270111					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37654621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	656 bp distal
Cul4b	cullin 4B	within coordinates
Gm61874	predicted gene, 61874	within coordinates
Rr394940	regulatory region 394940	465 bp upstream
Rr690807	regulatory region 690807	1011 bp distal
Tssr163211	transcription start site region 163211	1658 bp upstream
Tssr163212	transcription start site region 163212	1599 bp upstream
Tssr163213	transcription start site region 163213	1581 bp upstream
Tssr163214	transcription start site region 163214	1537 bp upstream
Tssr163215	transcription start site region 163215	1410 bp upstream
Tssr163216	transcription start site region 163216	1385 bp upstream
Tssr163217	transcription start site region 163217	1189 bp upstream
Tssr163218	transcription start site region 163218	1073 bp upstream
Tssr163219	transcription start site region 163219	849 bp upstream
Tssr163220	transcription start site region 163220	810 bp upstream
Tssr163221	transcription start site region 163221	782 bp upstream
Tssr163222	transcription start site region 163222	720 bp upstream
Tssr163223	transcription start site region 163223	697 bp upstream
Tssr163224	transcription start site region 163224	844 bp downstream