rs6270569 SNP Detail

Summary

• ID
  rs6270569
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19571080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTACAT TAATCATAGT
  TCAAATGCCA ATATACTTAG ATCGACAAAA GTCTTAACAT AGCAAAACAC ACACCCCGAC
  AGGAAACAGG TGACTCACAT CATAGGGGCT AAGGAGGCCC AATGATGGGA AGACCTAGGA
  AGGTGTGGTT CTGCTAACGG AAATCCAACA AGAGTTCATC CCTTCACCCA TGGGAACCTC
  S
  GAGGCATGTC AGAGCCCAGC CATGACTGGG GCAGGTAAGG AGCCTGCCTG CCCACTTTCG
  CTCTCCTGCT GGTGCCTCGG GTTTACCAAA CCAGGCAGAA CTGGAGAAGG GAATCTGATT
  GAAAGTGCAT CCAACTTGGC TCTCAACACC AGATCTGGGT GGAGGACAAC TGAGATTTAA
  TCTGGAGACC AGAGACTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8676388	WI_WGS_2_19716848	WI	MOUSE	f	SNP							C		G
ss37364099	NES08783825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G		C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6270569					SNP	C	C	C	C	C	C	C	G	G	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364099	NES08783825	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19571080 () rs orientation: forward

Symbol	Name	Function Class
Rr552495	regulatory region 552495	1370 bp proximal