rs6270586 SNP Detail

Summary

• ID
  rs6270586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19571089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCATAG TTCAAATGCC
  AATATACTTA GATCGACAAA AGTCTTAACA TAGCAAAACA CACACCCCGA CAGGAAACAG
  GTGACTCACA TCATAGGGGC TAAGGAGGCC CAATGATGGG AAGACCTAGG AAGGTGTGGT
  TCTGCTAACG GAAATCCAAC AAGAGTTCAT CCCTTCACCC ATGGGAACCT CCGAGGCATG
  Y
  CAGAGCCCAG CCATGACTGG GGCAGGTAAG GAGCCTGCCT GCCCACTTTC GCTCTCCTGC
  TGGTGCCTCG GGTTTACCAA ACCAGGCAGA ACTGGAGAAG GGAATCTGAT TGAAAGTGCA
  TCCAACTTGG CTCTCAACAC CAGATCTGGG TGGAGGACAA CTGAGATTTA ATCTGGAGAC
  CAGAGACTAG CCAGGCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8676405	WI_WGS_2_19716857	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6270586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19571089 () rs orientation: forward

Symbol	Name	Function Class
Rr552495	regulatory region 552495	1361 bp proximal