rs6270884 SNP Detail

Summary

• ID
  rs6270884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:78917985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATGAGA CTAAAAAGCT
  TCTGGACAGC CAAAGAAATT GACAGAAAAG TGAAGAAGCA GACCAAAGAA TGAAAGAAAT
  ATTTGATAAC TATATTTGAC AGTGATTAGT GAATATAATA TAAAAAGAAA CAACAATAAC
  AAAAAAACAC TAGAAAACAA ACAGCTCAAT TTAAAATGGG CTACAGAGTT CTCAATGTAC
  R
  AAATACAATA GTCTGGAAAA CAGTTTTTAA AAAGGGATCA ACGTCCTTGT TTTTTTAGAT
  ACTTTTTCTG TTAGTATGAT TGAAACATTT TGATTGAGGA AATTTATAGC AGAAACTGTT
  TAGTTGACTC TACGATGCCA GAGATTTAGA ATTCATGACA TTCGGGTAAA GGAATTGTGC
  CAGGAACATT TGAGAGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8676705	WI_WGS_5_78303421	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6270884					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:78917985 () rs orientation: forward

Symbol	Name	Function Class
D5Mit204	DNA segment, Chr 5, Massachusetts Institute of Technology 204	838 bp proximal
D5Mit204.1	DNA segment, Chr 5, Massachusetts Institute of Technology 204.1	745 bp proximal