rs6271409 SNP Detail

Summary

• ID
  rs6271409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCACTT GCATTTATGT
  GCCTATACAC ACAGAGCTAA CATAATAAAA AAAAATAAAT CTTAAAAAAA AAAAGATGTC
  TGACTCTAAA CCCAAATCCT CACTAATTAA TTCTAAGCGA AGACTGGCAG GTTTCCTTCA
  GGGCAGCCTG TGGCTGTGGC GGCGCACTGC AGGCGGGAGC CAGCTGGGTA ATCTCTCTAG
  Y
  ACAAGCCTGA AGGGCAAGAG CACCTTGTGG CTGGCTTGGC ATCAGACAAT AACCCTGTGT
  TCAGAGCCAC CAGCCCCCGT GGAAAGCTTA CCTAAGGCTG TTAGCAAGCT ATGGCCGGGC
  AGGTGGTGAT GCAGGCCTGT CTGTCAGCTC AGCCCTGTGG AGGCTGAGTC AGGGAGACTG
  AGAGCTTCTG GCTAGTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8677230	WI_WGS_5_134781036	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6271409					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194241 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	329 bp upstream
Tssr53804	transcription start site region 53804	287 bp upstream
Tssr53805	transcription start site region 53805	155 bp upstream
Tssr53806	transcription start site region 53806	134 bp upstream
Tssr53807	transcription start site region 53807	448 bp downstream
Tssr53808	transcription start site region 53808	708 bp downstream