rs6271548 SNP Detail

Summary

• ID
  rs6271548
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:78918148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAATTTA AAATGGGCTA
  CAGAGTTCTC AATGTACGAA ATACAATAGT CTGGAAAACA GTTTTTAAAA AGGGATCAAC
  GTCCTTGTTT TTTTAGATAC TTTTTCTGTT AGTATGATTG AAACATTTTG ATTGAGGAAA
  TTTATAGCAG AAACTGTTTA GTTGACTCTA CGATGCCAGA GATTTAGAAT TCATGACATT
  S
  GGGTAAAGGA ATTGTGCCAG GAACATTTGA GAGCTGATGA ACCCCAGACA GGCCATAAAG
  AGTGCACTGG GAATGGGTAG GGGGGCTTTT GAAACCTTAA ATTGTCCCTC AGTGTCATAC
  TTTTTCCTAT CAGGCGATAC CTTCCAATAC TTCACCAACT AGAAACGAAG TATTAGAATA
  GGTGAAACTC CCTGGAAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8677369	WI_WGS_5_78303584	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6271548					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:78918148 () rs orientation: forward

Symbol	Name	Function Class
D5Mit204	DNA segment, Chr 5, Massachusetts Institute of Technology 204	675 bp proximal
D5Mit204.1	DNA segment, Chr 5, Massachusetts Institute of Technology 204.1	582 bp proximal