rs6271624 SNP Detail

Summary

• ID
  rs6271624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8107494 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTTTTGTGCC ACTGCACTAA
  ATGCTAACAC AAACAGAACA TAACAATTCT TCAGTATTGA AGGAAAGGCT AACCTGTCCA
  GCCACAGCAG CAAAGTAACC ATATAGCGGA TCCTGAGTTT GTCCAGGGAA CGCAGGCCCT
  CCGGGAGCCC CACCATACTG TGAAAAAGAA AAGAAAAAAA AAAAAGGTAA AGGCATCAGA
  S
  AGAATTGAAT TTATCTTAAC CATCCAAGGC TTTTGTACAA TTGACGCCTG TGCGACCTTC
  ACAGTCTCTA TCTTCCCCAC CACCTTGACT CAGCTCAGTG ACCCACCAGG CTTGTCCACT
  CCTGCTCCTG ACATCTAAAA GCTGGAGACT TGGTCCAAAA CAAGTTTCAT GAGAGTGATG
  GCCACTAAAC GCAGACCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8677445	WI_WGS_5_5803791	WI	MOUSE	f	SNP	G	C
ss321459858	CHEV_5_8057494	CHEVERUD	SCREENING_POP	r	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6271624					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8107494 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	586 bp distal
Gm15730	predicted gene 15730	1941 bp downstream
Rr607089	regulatory region 607089	957 bp distal
Rr607090	regulatory region 607090	772 bp distal
Rr607091	regulatory region 607091	559 bp proximal
Sri	sorcin	within coordinates
Tssr45107	transcription start site region 45107	943 bp downstream
Tssr45108	transcription start site region 45108	909 bp downstream