rs6272157 SNP Detail

Summary

• ID
  rs6272157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92599203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAGAGGC CAAGTGACTT
  CCTGAAAGTC ACCAAGCAAA TTGGTAACCG GGAGGACTGG TGGACAGAGG TTGGGCTGGC
  AGTGAGGTAA ACCTGGGAGG ATCTAACTCA CTCACATTTC ATCTGAACTC TTCTAAAGCT
  GGAGATGAGG AGAGAAATGT CCACTCTGAG TTTGTATCCA CAAGGCAGAG ACAGGACCAC
  Y
  GCGGAAGCAT GGTTGCCTTG TTCTGGAAAG CACATCTGTA ACTTTAGTTG TTGCTGCACT
  GCTCCAAAGT GGCCACCACA GCCCGTTTTG TGCACGAGGA GACTGGGGTG ACGAATAGGA
  GGAAACTTGC TGAGGCTTCA GAGTGAGCAG GTCGAGGGGA AGTCTCTGAC CTGCATCTGC
  TGGACTTGCC ACCTCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8677979	WI_WGS_2_93747756	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6272157					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92599203 () rs orientation: forward

Symbol	Name	Function Class
Rr560991	regulatory region 560991	400 bp distal