rs6272923 SNP Detail

Summary

• ID
  rs6272923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69196978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGATGCCCTG
  GGACAAGAGG GAGACTGTAG CTTCCTCAGA CGGAAAGCTT CTTTGGGGTT AATCATTCAG
  TGTTTTTGTC ACTGAGAAGG GTTCTGGAAC TGAGCTGAAA GAGGCATCAG GGTGCTTAGC
  TGAAGTGCCA GGGGGAGGGG GGTAGCGGGA GGGAGTGTGG AAAGTGGTCA GAGGCAAGGC
  AGAGAGCTTC CGGGCCGCCA CAGGTGATCG GTTAGTAAAG AGGTGGCGAG GGACTTTGGT
  K
  CGGGCCCCTG GGAGCGCAGG GGGGCAGCAC TGTGTNGGGG TGGGCCGTTC CCGGTCACCT
  GCCCGCGGGG GCGGAGCGCG GCGCCCAGGC GCACCCGCCT CCCGCCTCTT GCTCCCGCCC
  CGGGAGGAAG CGGAGGGGCG CGGTGTAAAC AGAGCGGCGG CCGTGATGTC AGCCGGTCAC
  ATGGAGCCTC TTATGGCTCG GGATGGCTCT CGGCGGGCGG GCAGCTGCGG CAGCTGCTGC
  TGTGGCTCGG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8678747	WI_WGS_9_69888981	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6272923					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69196978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			within coordinates
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			4 bp distal
Rr682145	regulatory region 682145			within coordinates
Tssr85839	transcription start site region 85839			1292 bp downstream
Tssr85840	transcription start site region 85840			145 bp upstream
Tssr85841	transcription start site region 85841			169 bp upstream
Tssr85842	transcription start site region 85842			206 bp upstream
Tssr85843	transcription start site region 85843			213 bp upstream