rs6273108 SNP Detail

Summary

• ID
  rs6273108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:78918369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATTTGA GAGCTGATGA
  ACCCCAGACA GGCCATAAAG AGTGCACTGG GAATGGGTAG GGGGGCTTTT GAAACCTTAA
  ATTGTCCCTC AGTGTCATAC TTTTTCCTAT CAGGCGATAC CTTCCAATAC TTCACCAACT
  AGAAACGAAG TATTAGAATA GGTGAAACTC CCTGGAAGCC ATTGTCAATC AAGCCACATT
  Y
  GGCAAATAGG ACAACACAGG TCTCATCTCA CCTTAGAATA GCGATCACTG AAATAAAGGA
  TAAAAGAATA AAAGAAGAAG AAAAAACAGT ATTAGATATT AGTTGCCTGA AGCTCTTCAT
  CTACTGCTCT CTTGTAATGA GAGTCTCACA ATCAAGTTTT ACACTTCAAC TAGCAATGTT
  ACTGTTCTGG TCTAGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8678932	WI_WGS_5_78303805	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6273108					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:78918369 () rs orientation: forward

Symbol	Name	Function Class
D5Mit204	DNA segment, Chr 5, Massachusetts Institute of Technology 204	454 bp proximal
D5Mit204.1	DNA segment, Chr 5, Massachusetts Institute of Technology 204.1	361 bp proximal