rs6273196 SNP Detail

Summary

• ID
  rs6273196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:78918428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGCTTT TGAAACCTTA
  AATTGTCCCT CAGTGTCATA CTTTTTCCTA TCAGGCGATA CCTTCCAATA CTTCACCAAC
  TAGAAACGAA GTATTAGAAT AGGTGAAACT CCCTGGAAGC CATTGTCAAT CAAGCCACAT
  TCGGCAAATA GGACAACACA GGTCTCATCT CACCTTAGAA TAGCGATCAC TGAAATAAAG
  K
  ATAAAAGAAT AAAAGAAGAA GAAAAAACAG TATTAGATAT TAGTTGCCTG AAGCTCTTCA
  TCTACTGCTC TCTTGTAATG AGAGTCTCAC AATCAAGTTT TACACTTCAA CTAGCAATGT
  TACTGTTCTG GTCTAGTTTA AGCAATCATA TTGTTGGGAT TTCATGGAAG CATTTTCCCT
  GTTGCATGTA AAAGACATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8679020	WI_WGS_5_78303864	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6273196					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:78918428 () rs orientation: forward

Symbol	Name	Function Class
D5Mit204	DNA segment, Chr 5, Massachusetts Institute of Technology 204	395 bp proximal
D5Mit204.1	DNA segment, Chr 5, Massachusetts Institute of Technology 204.1	302 bp proximal