rs6273613 SNP Detail

Summary

• ID
  rs6273613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCAGgtggtg
  atgcaggcct gtctgtcagc tcagccctgt ggaggctgag tcagggagac tgagagcttc
  tggctagtgt aggctgcaga gtgagacgtg tgtacgtgag tgtgtgtgtg catgtgtgtg
  tgcacatgtg tgtgtacaca ctcaagtgtg tgtgagtatg tgcatgantg tgtatgtgtg
  tgctgtttgt gtgtaagagt attgcgtgtg tgtgcacatg agcgtgtgtg tgtgtgtgtg
  Y
  acatgtgcgt atgtgtatgA GGGAAGAGAA GGAGGNAGAG AGNAAGAGAA CACACActag
  tgaaatatct cagtgggtaa agctgcttgc caccaatccn gggaccagtg ttctatccct
  ggggcccaca cggtggatgg agagaactga ctcctgaaag ctgtcctcng atcctnacag
  gggtgctgtg ncaTAAAGCA AAATCAACAT TGTCATTTAA AGGAGCNAGA AACCAGAGGA
  AAAGAAATGA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8679437	WI_WGS_5_134781405	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6273613					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194610 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	698 bp upstream
Tssr53804	transcription start site region 53804	656 bp upstream
Tssr53805	transcription start site region 53805	524 bp upstream
Tssr53806	transcription start site region 53806	503 bp upstream
Tssr53807	transcription start site region 53807	79 bp downstream
Tssr53808	transcription start site region 53808	339 bp downstream