rs6274220 SNP Detail

Summary

• ID
  rs6274220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGTGTG TGTGAGTATG
  TGCATGAGTG TGTATGTGTG TGCTGTTTGT GTGTAAGAGT ATTGCGTGTG TGTGCACATG
  AGCGTGTGTG TGTGTGTGTG TACATGTGCG TATGTGTATG AGGGAAGAGA AGGAGGGAGA
  GAGAAAGAGA ACACACACTA GTGAAATATC TCAGTGGGTA AAGCTGCTTG CCACCAATCC
  Y
  GGGACCAGTG TTCTATCCCT GGGGCCCACA CGGTGGATGG AGAGAACTGA CTCCTGAAAG
  CTGTCCTCCG ATCCTAACAG GGGTGCTGTG ACATAAAGCA AAATCAACAT TGTCATTTAA
  AGGAGCGAGA AACCAGAGGA AAAGAAATGA GGGAGAGACA GACTAAGAGA GAAACATTAG
  GGCAGAGTCC ATGGTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8680044	WI_WGS_5_134781505	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6274220					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194710 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	798 bp upstream
Tssr53804	transcription start site region 53804	756 bp upstream
Tssr53805	transcription start site region 53805	624 bp upstream
Tssr53806	transcription start site region 53806	603 bp upstream
Tssr53807	transcription start site region 53807	5 bp upstream
Tssr53808	transcription start site region 53808	239 bp downstream