rs6274330 SNP Detail

Summary

• ID
  rs6274330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCGTG TGTGTGTGTG
  TGTGTACATG TGCGTATGTG TATGAGGGAA GAGAAGGAGG GAGAGAGAAA GAGAACACAC
  ACTAGTGAAA TATCTCAGTG GGTAAAGCTG CTTGCCACCA ATCCTGGGAC CAGTGTTCTA
  TCCCTGGGGC CCACACGGTG GATGGAGAGA ACTGACTCCT GAAAGCTGTC CTCCGATCCT
  R
  ACAGGGGTGC TGTGACATAA AGCAAAATCA ACATTGTCAT TTAAAGGAGC GAGAAACCAG
  AGGAAAAGAA ATGAGGGAGA GACAGACTAA GAGAGAAACA TTAGGGCAGA GTCCATGGTC
  CCATAAGAGG CTGGGATGTT TGTGAGGGTC AGCGGTGAAG GACGCACCCC TCAGTACACC
  CATGTCAAAC ACCTAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8680155	WI_WGS_5_134781581	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6274330					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194786 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	874 bp upstream
Tssr53804	transcription start site region 53804	832 bp upstream
Tssr53805	transcription start site region 53805	700 bp upstream
Tssr53806	transcription start site region 53806	679 bp upstream
Tssr53807	transcription start site region 53807	81 bp upstream
Tssr53808	transcription start site region 53808	163 bp downstream