rs6274353 SNP Detail

Summary

• ID
  rs6274353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT ACATGTGCGT
  ATGTGTATGA GGGAAGAGAA GGAGGGAGAG AGAAAGAGAA CACACACTAG TGAAATATCT
  CAGTGGGTAA AGCTGCTTGC CACCAATCCT GGGACCAGTG TTCTATCCCT GGGGCCCACA
  CGGTGGATGG AGAGAACTGA CTCCTGAAAG CTGTCCTCCG ATCCTAACAG GGGTGCTGTG
  R
  CATAAAGCAA AATCAACATT GTCATTTAAA GGAGCGAGAA ACCAGAGGAA AAGAAATGAG
  GGAGAGACAG ACTAAGAGAG AAACATTAGG GCAGAGTCCA TGGTCCCATA AGAGGCTGGG
  ATGTTTGTGA GGGTCAGCGG TGAAGGACGC ACCCCTCAGT ACACCCATGT CAAACACCTA
  AGAGGACCAA GAAGGACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8680178	WI_WGS_5_134781596	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6274353					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194801 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Rr622551	regulatory region 622551	1562 bp distal
Tssr53803	transcription start site region 53803	889 bp upstream
Tssr53804	transcription start site region 53804	847 bp upstream
Tssr53805	transcription start site region 53805	715 bp upstream
Tssr53806	transcription start site region 53806	694 bp upstream
Tssr53807	transcription start site region 53807	96 bp upstream
Tssr53808	transcription start site region 53808	148 bp downstream