rs6274811 SNP Detail

Summary

• ID
  rs6274811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGAGGG AGAGAGAAAG
  AGAACACACA CTAGTGAAAT ATCTCAGTGG GTAAAGCTGC TTGCCACCAA TCCTGGGACC
  AGTGTTCTAT CCCTGGGGCC CACACGGTGG ATGGAGAGAA CTGACTCCTG AAAGCTGTCC
  TCCGATCCTA ACAGGGGTGC TGTGACATAA AGCAAAATCA ACATTGTCAT TTAAAGGAGC
  R
  AGAAACCAGA GGAAAAGAAA TGAGGGAGAG ACAGACTAAG AGAGAAACAT TAGGGCAGAG
  TCCATGGTCC CATAAGAGGC TGGGATGTTT GTGAGGGTCA GCGGTGAAGG ACGCACCCCT
  CAGTACACCC ATGTCAAACA CCTAAGAGGA CCAAGAAGGA CAGTAGCTGG GAAGGGTTCT
  TTGTCTTGCC TTCCTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8680636	WI_WGS_5_134781632	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6274811					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194837 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	925 bp upstream
Tssr53804	transcription start site region 53804	883 bp upstream
Tssr53805	transcription start site region 53805	751 bp upstream
Tssr53806	transcription start site region 53806	730 bp upstream
Tssr53807	transcription start site region 53807	132 bp upstream
Tssr53808	transcription start site region 53808	112 bp downstream