rs6275498 SNP Detail

Summary

• ID
  rs6275498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:166262695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTTGCC TTTATTTTCT
  GATCCTAAAG AGAAAGAATC AGATAGGTAG TTTATTATGC TGTCTGTTCT CAGAAATGGT
  AAAGGTTCTC TCTCTCTCTC TCTCTCTCTC AAGTTTGTGT TTGTGTGTAT TGCATACACT
  ATATGCATAT GTTTGTATGT GACCATACTC ACAATGAGCA TGTACACAGA AGCCAGACAT
  Y
  AATGCCTTGT ATCAATCACT CTCGTTTTTC ATCATCTAGT TTTGAATCAG GGTCTATCAC
  TGAACCTGGA GCTTACTGAT TCAGTTAGGC TTGCTGACTG GTGAGCTGCT GAGATCCACT
  TGTCCCTGCC TGCCCAGTGT TGGGATTAGA GTTGCACACC AGCAGACATG GATTTTCATT
  GGGGGTACTA AGGATTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681325	WI_WGS_X_144666713	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275498					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:166262695 () rs orientation: forward

Symbol	Name	Function Class
Frmpd4	FERM and PDZ domain containing 4	within coordinates
Rr7100	regulatory region 7100	1780 bp distal