rs6275527 SNP Detail

Summary

• ID
  rs6275527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:166262719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGAGAA AGAATCAGAT
  AGGTAGTTTA TTATGCTGTC TGTTCTCAGA AATGGTAAAG GTTCTCTCTC TCTCTCTCTC
  TCTCTCAAGT TTGTGTTTGT GTGTATTGCA TACACTATAT GCATATGTTT GTATGTGACC
  ATACTCACAA TGAGCATGTA CACAGAAGCC AGACATTAAT GCCTTGTATC AATCACTCTC
  R
  TTTTTCATCA TCTAGTTTTG AATCAGGGTC TATCACTGAA CCTGGAGCTT ACTGATTCAG
  TTAGGCTTGC TGACTGGTGA GCTGCTGAGA TCCACTTGTC CCTGCCTGCC CAGTGTTGGG
  ATTAGAGTTG CACACCAGCA GACATGGATT TTCATTGGGG GTACTAAGGA TTCAAAATTC
  AGGCCTTCAT GTTTGTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681354	WI_WGS_X_144666737	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275527					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:166262719 () rs orientation: forward

Symbol	Name	Function Class
Frmpd4	FERM and PDZ domain containing 4	within coordinates
Rr7100	regulatory region 7100	1804 bp distal