rs6275800 SNP Detail

Summary

• ID
  rs6275800
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63641636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTTTTA ATATCTTGAT
  TATTTGAATT TTACTTATTC CTCTTTGGAG AAATGTGCTT TTTTTTTCTA AATGGAACAC
  AGATTAAGCA GAGTTGGTGG AAGGAGAGTA CTGGCCTGTG TCCTGACATT GCGGTTTGCA
  AAGTATAGCT CCTTTGCTGG TGTCCTTGTC TCTTGAGTCT CCTTCCCTGC CAGGTAAAGT
  S
  AAGGCGAGGA TGGTCAGCAT CTCACAGCAT CTCACAGAAG TCTAGCTAGA AGCTGAGTCT
  GACACAGCAT CTGTGGGAAC ACTGACTGGC ACTTAGCCTA TAAGACTTTG TTTTGTCTTT
  TATCACTCAA AATTTTATTG TAAGCTTCTT TCTTATCATG CAGACCTGGG CACACTTTCA
  CAACTCTCCT TACTATGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss8681627	WI_WGS_14_54509411	WI	MOUSE	f	SNP		G	C
ss49187573	NES12487772	PERLEGEN	MM_PANEL2	f	SNP	G			C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs6275800					SNP	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187573	NES12487772	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63641636 () rs orientation: forward

Symbol	Name	Function Class
Blk	B lymphoid kinase	within coordinates
Tssr129184	transcription start site region 129184	1041 bp downstream
Tssr129185	transcription start site region 129185	1064 bp downstream