rs6276360 SNP Detail

Summary

• ID
  rs6276360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163900745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CACAGTCTGC TGCAGTTTTG
  R
  GGTGTGCACT GCCACATTTG TCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8682189	WI_WGS_1_165263879	WI	MOUSE	f	SNP			A	G
ss45006172	mCV23376171	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		G
ss145971438	ENSMUSSNP3642280	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			G
ss320085107	CHEV_1_166003307	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6276360					SNP	A	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163900745 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	1672 bp downstream
Rr396478	regulatory region 396478	681 bp downstream
Rr422140	regulatory region 422140	534 bp distal
Rr422141	regulatory region 422141	72 bp proximal
Sell	selectin, lymphocyte	within coordinates