rs6276684 SNP Detail

Summary

• ID
  rs6276684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTCTCT TATGATGTAG
  AAGGTGGGCT CAGAGAGGGC AAGTGAGGCT GCACAGCACA GCACCCTGAG TCCAGACTCC
  CAGTAGTGCT CTCTGCCTAC GTGGTTCCTG GCAATCCCTG TGGTAAAAGT CACCATCCCT
  GTGAGTGCTC ACCCTGAGGG GCTGTCAAAA AGAGGGTGTT CCCCCTGGAT CCTGAAAAGC
  R
  TTAAGGGCAC AGCCCTGTTG TTTGAAAACC GCATCCCCGT TCATTTTCAT ATGTGCACTT
  TACAGAAACA CCAACAGATG TGCTAGCTCT CCCCTTGCCA GATTCCTGGG AGATGCAAGA
  CTCAAGAAAC GTTGTGCTTG GAGTCTATGG GGAGCCAGAG AAGTCCCAAG CCTAGCGTTT
  CCCAGGAAGC AAGGGCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8682514	WI_WGS_4_45858009	WI	MOUSE	f	SNP					A		G
ss37991025	NES09451428	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A		G		A	A	A	A	A	A	A
ss45706981	mCV25226626	ABI	CRAMUS_MOUSE	f	SNP		G			A			A
ss146270540	ENSMUSSNP7020793	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6276684					SNP	A	G	A	A	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991025	NES09451428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010466 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	394 bp upstream
Rr367622	regulatory region 367622	162 bp upstream
Tssr37147	transcription start site region 37147	772 bp upstream
Tssr41615	transcription start site region 41615	331 bp downstream
Tssr41616	transcription start site region 41616	660 bp downstream