rs6276809 SNP Detail

Summary

• ID
  rs6276809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163900796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCGGACC AACGCACCAG CCACAGGCCC ACAGTCTGCT
  GCAGTTTTGA GGTGTGCACT GCCACATTTG TCCACGTTTA TCTAGCAGAT CTACTCAAAA
  Y
  TGTAAGATTC ACATACCCCG GCAGCTTTAA AGATTCCCCC GTATTAAGGT CAGGTACTAT
  GAGTAACCTT TGTGACTCCT TTGTGCTGCT TCCTGTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8682639	WI_WGS_1_165263930	WI	MOUSE	f	SNP			C	T
ss45136591	mCV23376172	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		T
ss145971442	ENSMUSSNP549141	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6276809					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163900796 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	1723 bp downstream
Rr396478	regulatory region 396478	732 bp downstream
Sell	selectin, lymphocyte	within coordinates