rs6276815 SNP Detail

Summary

• ID
  rs6276815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163900802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC AGATCTACTC AAAACTGTAA
  R
  ATTCACATAC CCCGGCAGCT TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8682645	WI_WGS_1_165263936	WI	MOUSE	f	SNP								G		A
ss45185234	mCV23376173	ABI	CRAMUS_MOUSE	f	SNP		G	G					G			A
ss60338771	NES15834914	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		A			A	A		A	G		G
ss145971446	ENSMUSSNP4494696	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G								A
ss320085109	CHEV_1_166003364	CHEVERUD	SCREENING_POP	f	SNP														G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6276815					SNP	G	G	G	G	G	A	G	G	A	A	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338771	NES15834914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163900802 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	1729 bp downstream
Rr396478	regulatory region 396478	738 bp downstream
Rr422140	regulatory region 422140	591 bp distal
Rr422141	regulatory region 422141	15 bp proximal
Sell	selectin, lymphocyte	within coordinates