rs6277046 SNP Detail

Summary

• ID
  rs6277046
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23349533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCACCT GCTGACACCC
  AGACAGCCTG ATCTGTCTCT GAAGAAGAAA ACTGACCCCC ACATGCTGTC ATCTGACCTC
  CACATGTGTG CTGAGATACA CCCATGAACA CAGGCAGGGA CATACCAAAT AAACTTTAAA
  TTTATTTAAA AATTAAAAAA TGATAGACAG AAATGTGTAA TTGTTGAGAG AGCTTGACCT
  S
  AGAGGCACAT AGAGTTGCTA TTTTTTAATT TCTCTCTGAA AGTCAGAGTA GATTGGAAAA
  AACAAAATAT TAATCAGAAC ATAAGTTAAA ATTTTAACAC ATAATGAAAT GGTTACAAAT
  TAAATAAGTA AGGGAAAGTA AAGGCAACGA GGGGAAAAAT CAGTTATGCC ATTCAGTTAA
  CTCATAAGAG ATTTGGCAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8682878	WI_WGS_13_22569457	WI	MOUSE	f	SNP							G		C
ss47377113	NES11372987	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G		G		G	G	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6277046					SNP	G	G	G	G	C	G	G	G	C	G	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47377113	NES11372987	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23349533 () rs orientation: forward

Symbol	Name	Function Class
Gm60433	predicted gene, 60433	within coordinates
Vmn1r219	vomeronasal 1 receptor 219	1782 bp downstream
Vmn1r-ps130	vomeronasal 1 receptor, pseudogene 130	1248 bp upstream