rs6277274 SNP Detail

Summary

• ID
  rs6277274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTCACCC TGAGGGGCTG
  TCAAAAAGAG GGTGTTCCCC CTGGATCCTG AAAAGCATTA AGGGCACAGC CCTGTTGTTT
  GAAAACCGCA TCCCCGTTCA TTTTCATATG TGCACTTTAC AGAAACACCA ACAGATGTGC
  TAGCTCTCCC CTTGCCAGAT TCCTGGGAGA TGCAAGACTC AAGAAACGTT GTGCTTGGAG
  Y
  CTATGGGGAG CCAGAGAAGT CCCAAGCCTA GCGTTTCCCA GGAAGCAAGG GCAATAGCAA
  AGGCAGGAGG GAAAGTCACA GTGAACTTAC TGAAAATCTG ACTTTGCTTT GTCATTGACC
  TGATGTTCCA GAGTTGGGAC TGGCTGCGAC CCTTGTTTCC CTGCTGCAGT CTCTGGGTAC
  CACTTATATC CTTCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8683108	WI_WGS_4_45858153	WI	MOUSE	f	SNP				T		C
ss37991022	NES09451433	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6277274					SNP	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991022	NES09451433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010610 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	250 bp upstream
Rr367622	regulatory region 367622	18 bp upstream
Tssr37147	transcription start site region 37147	628 bp upstream
Tssr41615	transcription start site region 41615	187 bp downstream
Tssr41616	transcription start site region 41616	516 bp downstream