rs6277276 SNP Detail

Summary

• ID
  rs6277276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCTGA GGGGCTGTCA
  AAAAGAGGGT GTTCCCCCTG GATCCTGAAA AGCATTAAGG GCACAGCCCT GTTGTTTGAA
  AACCGCATCC CCGTTCATTT TCATATGTGC ACTTTACAGA AACACCAACA GATGTGCTAG
  CTCTCCCCTT GCCAGATTCC TGGGAGATGC AAGACTCAAG AAACGTTGTG CTTGGAGTCT
  R
  TGGGGAGCCA GAGAAGTCCC AAGCCTAGCG TTTCCCAGGA AGCAAGGGCA ATAGCAAAGG
  CAGGAGGGAA AGTCACAGTG AACTTACTGA AAATCTGACT TTGCTTTGTC ATTGACCTGA
  TGTTCCAGAG TTGGGACTGG CTGCGACCCT TGTTTCCCTG CTGCAGTCTC TGGGTACCAC
  TTATATCCTT CCCTCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8683110	WI_WGS_4_45858156	WI	MOUSE	f	SNP						A		G
ss37991021	NES09451435	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G		A		A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6277276					SNP	A	G	A	A	G	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991021	NES09451435	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010613 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	247 bp upstream
Rr367622	regulatory region 367622	15 bp upstream
Tssr37147	transcription start site region 37147	625 bp upstream
Tssr41615	transcription start site region 41615	184 bp downstream
Tssr41616	transcription start site region 41616	513 bp downstream