rs6277319 SNP Detail

Summary

• ID
  rs6277319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTGGAGG TTGAGGGCGG
  GGCCACTGTC CCTTTGGATA TATCGCAGAC TGGGCTGGCT CTGCCTGCTC AGCACTCACT
  CAGTGCTGGT CTTGGTTTCA CTCTCAGCCT AGACTCTTGA GCGAGCTCCC AGGGAGGAGC
  CAACTTCCTC ATCTTGCTTT GGATTTGAAT CCCTCCAAGC AGACCAGGGA TCACCCCAAG
  Y
  TGCTGGAAGC TGTGATGCCC CCATGATCAC TCACACTGTG GCACACACAA GCACACAGGG
  AGAAGCACAA AGCTGTACTC AGACTCCAGG CCCCGAGCCA ACCACTCCAG CCGGACACGC
  CCCTCCGCTC ACCGTCCCAG GGATGTAGTG GAAGATCCTG TTAGCCGCGG TGTCCCCATC
  AGGCCTAGCC TCGGTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8683153	WI_WGS_4_151702983	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6277319					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312541 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1251 bp downstream
Mir7658	microRNA 7658	1975 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	433 bp proximal
Rr606704	regulatory region 606704	468 bp proximal
Tssr45022	transcription start site region 45022	420 bp downstream
Tssr45023	transcription start site region 45023	456 bp downstream
Tssr45024	transcription start site region 45024	711 bp downstream