rs6277620 SNP Detail

Summary

• ID
  rs6277620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37279457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCCCTC AACCCCCCTG
  CCTTCGTTCT GCTGTTTGCA TCGCCATCCC TGTTTGTGTT TTCACGTGAA TTGACGTTTA
  AAAGCTCAGT TGCACCAAAG TTCAAAGGAA GAAGAGGGAG ATGGTGGAAG AGGGAGAGAT
  GGACAACAGC TGCAGGGAGC CCTGTAGTGT TGGTTTGTTT CCCCCCCTCT GGCCCGTGGC
  W
  TTTTTCTCTT CCCTACTGTC ACCAGCCTTC TAAACCAGCC AACAACCAAA GATGTGTTAC
  ACAATGCTAT GAGATGCCTT TTCCGTAGGC AGGTCGCAAA TCTCTGGGGA GGAAAGGTTT
  GAGACCCACT TGGGGTGATC CTGGGCTAAC CCTGACCAGC TGGATACCTA ATCAAAATGA
  AACCAGGTCC CAGTATCACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8683457	WI_WGS_X_23772101	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6277620					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37279457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22678	CpG island 22678	150 bp distal
Rr8558	regulatory region 8558	within coordinates
Tssr160779	transcription start site region 160779	830 bp downstream
Tssr160780	transcription start site region 160780	754 bp downstream
Tssr160781	transcription start site region 160781	738 bp downstream
Tssr160782	transcription start site region 160782	715 bp downstream
Zbtb33	zinc finger and BTB domain containing 33	within coordinates