rs6278546 SNP Detail

Summary

• ID
  rs6278546
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21133240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTTACA AACATCTGTG
  AGCCGCCCTG TGGATGCCGG CAATCAACCC CCAGTCTGTG AGAACAGCCT AAAGCTCTTA
  ACAGTTGCAC AGCCCTTGCA ACCCCAGGGT ATTTGGGGAG ACGCCCCAGC TGTAGACAGG
  GACTGCCCAG ATGTAAGGAT GAAATTCCAG CACACGGAAT AGCTGATGGC TGGTCTCCAA
  S
  GGGCCACACT CTAGCAATAA TTTTCTAGAA AATCTAGCCA GTTCCATGCA ACTCCATGTA
  TTTGCTCTTG GGATGTGTGT GTGTGTGTGT GTTTTCAAGA GTTCAAAGTT AGATGTGAGT
  GAGGCTTCTC TTGTTTGTGG TGTTAGATGT CAGCACTAAA TATCATCTCT TCATTCCCTT
  TCCATCCTGC ACGTGTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8684387	WI_WGS_9_21295379	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6278546					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21133240 () rs orientation: forward

Symbol	Name	Function Class
Rr383053	regulatory region 383053	1501 bp upstream
Rr401265	regulatory region 401265	1147 bp downstream
Rr674752	regulatory region 674752	within coordinates
Rr674753	regulatory region 674753	1331 bp distal
Rr674754	regulatory region 674754	211 bp distal
Rr674755	regulatory region 674755	1350 bp proximal
Rr674756	regulatory region 674756	1551 bp proximal
Tssr83976	transcription start site region 83976	1172 bp downstream