rs6278697 SNP Detail

Summary

• ID
  rs6278697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37279723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGAGAT GCCTTTTCCG
  TAGGCAGGTC GCAAATCTCT GGGGAGGAAA GGTTTGAGAC CCACTTGGGG TGATCCTGGG
  CTAACCCTGA CCAGCTGGAT ACCTAATCAA AATGAAACCA GGTCCCAGTA TCACCTAGAC
  ACCTACATTT GAATCATTCC CATGTTGGAA AAAAAAAACC CTTATTTTCC AATTATAAAA
  R
  TCATGTGGCC ATATACAGAA ATCTCTCCAC TTGAAAGTGG TTTCTGTTGA AACCTTCATG
  TTTTGGATTG TTGGCAGATT GTCTAAAGGT CACACTTTGT GATGAATGCC TTTGTGATTG
  CCTGTAATTC CTTGGTGCTG TTAAAATGGA GTAGCTAACA TGGTTTTAAT TTTTGGCTTT
  TAGACTTTTA AAGTTATGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8684538	WI_WGS_X_23772367	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6278697					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37279723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22678	CpG island 22678	416 bp distal
Rr8558	regulatory region 8558	within coordinates
Tssr160779	transcription start site region 160779	1096 bp downstream
Tssr160780	transcription start site region 160780	1020 bp downstream
Tssr160781	transcription start site region 160781	1004 bp downstream
Tssr160782	transcription start site region 160782	981 bp downstream
Zbtb33	zinc finger and BTB domain containing 33	within coordinates