rs6278930 SNP Detail

Summary

• ID
  rs6278930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21133273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCGGCAA TCAACCCCCA
  GTCTGTGAGA ACAGCCTAAA GCTCTTAACA GTTGCACAGC CCTTGCAACC CCAGGGTATT
  TGGGGAGACG CCCCAGCTGT AGACAGGGAC TGCCCAGATG TAAGGATGAA ATTCCAGCAC
  ACGGAATAGC TGATGGCTGG TCTCCAAGGG GCCACACTCT AGCAATAATT TTCTAGAAAA
  W
  CTAGCCAGTT CCATGCAACT CCATGTATTT GCTCTTGGGA TGTGTGTGTG TGTGTGTGTT
  TTCAAGAGTT CAAAGTTAGA TGTGAGTGAG GCTTCTCTTG TTTGTGGTGT TAGATGTCAG
  CACTAAATAT CATCTCTTCA TTCCCTTTCC ATCCTGCACG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGCA CGTGCGCAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8684772	WI_WGS_9_21295412	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6278930					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21133273 () rs orientation: forward

Symbol	Name	Function Class
Rr383053	regulatory region 383053	1468 bp upstream
Rr401265	regulatory region 401265	1180 bp downstream
Rr674752	regulatory region 674752	within coordinates
Rr674753	regulatory region 674753	1364 bp distal
Rr674754	regulatory region 674754	244 bp distal
Rr674755	regulatory region 674755	1317 bp proximal
Rr674756	regulatory region 674756	1518 bp proximal
Tssr83976	transcription start site region 83976	1205 bp downstream