rs6279211 SNP Detail

Summary

• ID
  rs6279211
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37279845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTATC ACCTAGACAC
  CTACATTTGA ATCATTCCCA TGTTGGAAAA AAAAAACCCT TATTTTCCAA TTATAAAAAT
  CATGTGGCCA TATACAGAAA TCTCTCCACT TGAAAGTGGT TTCTGTTGAA ACCTTCATGT
  TTTGGATTGT TGGCAGATTG TCTAAAGGTC ACACTTTGTG ATGAATGCCT TTGTGATTGC
  M
  TGTAATTCCT TGGTGCTGTT AAAATGGAGT AGCTAACATG GTTTTAATTT TTGGCTTTTA
  GACTTTTAAA GTTATGATGT TTTAAATACA GAGATACTCA TGCCTCCCTT GTGTGTTTAT
  ATGTGAGCAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTTGTGT GTGTGTGTGT
  AAGTACCAGG TGACAGTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8685056	WI_WGS_X_23772489	WI	MOUSE	f	SNP							C		A
ss46887633	NES10950035	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6279211					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887633	NES10950035	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37279845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22678	CpG island 22678	538 bp distal
Rr8558	regulatory region 8558	within coordinates
Tssr160779	transcription start site region 160779	1218 bp downstream
Tssr160780	transcription start site region 160780	1142 bp downstream
Tssr160781	transcription start site region 160781	1126 bp downstream
Tssr160782	transcription start site region 160782	1103 bp downstream
Zbtb33	zinc finger and BTB domain containing 33	within coordinates