rs6279678 SNP Detail

Summary

• ID
  rs6279678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC TGCGTTCTGG AGGCCCCCCT
  K
  GGCCAGACAG CCCGCAAGTG GCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8685526	WI_WGS_17_47501020	WI	MOUSE	f	SNP			G	T
ss145717314	ENSMUSSNP3945401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
ss325408749	CHEV_17_48601531	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6279678					SNP	G	T	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769234 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	within coordinates
Rr528302	regulatory region 528302	1685 bp distal
Rr528303	regulatory region 528303	510 bp distal
Tssr145120	transcription start site region 145120	149 bp upstream
Unc5cl	unc-5 family C-terminal like	within coordinates