rs6279936 SNP Detail

Summary

• ID
  rs6279936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127857094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATAAAAA ACAAGGACAG GAAATCAGAA AGACCCAGTC
  ACCAGCACCA GGAATGACAG AGGATGTGTG GTCAGGGAAT TTGCAGCCAT TGAAAGACCA
  R
  TAAGGGAGAA GCTTTGTGAA TCTGACAGCT CAGGAAGAAA GGACCAATTC TTCAAAAGCC
  ACCAACTGTT CAAATTTATT AAAGTTAAAA TAGAGTACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8685785	WI_WGS_2_128996742	WI	MOUSE	f	SNP			G	A
ss45303573	mCV22732971	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		A
ss147549445	ENSMUSSNP33940	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6279936					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127857094 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	254 bp downstream
Rr564632	regulatory region 564632	277 bp distal
Tssr20037	transcription start site region 20037	9 bp upstream