rs6279952 SNP Detail

Summary

• ID
  rs6279952
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21133487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACTCCA TGTATTTGCT
  CTTGGGATGT GTGTGTGTGT GTGTGTTTTC AAGAGTTCAA AGTTAGATGT GAGTGAGGCT
  TCTCTTGTTT GTGGTGTTAG ATGTCAGCAC TAAATATCAT CTCTTCATTC CCTTTCCATC
  CTGCACGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCACGT GCGCAACTAT GGGCATGATG
  K
  GCATGAGTGG GGACAACTGA TTGCGGCCGA ATCTCTTTTT TGCTGGGTTT GTTTGGTTGT
  TTGGTTGGTT TGGTTTTTTG AGACAGGGTT TCTCTGTATA ACCCTGGCTG TCCTGGTGTT
  TGTTTATTTT TAATCCTGAC TTTGATTCCT TGTTTGTTTT GACACAGGGT CTCTCTCCCA
  CAGTTGGCTG TGTAGACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8685801	WI_WGS_9_21295626	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6279952					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21133487 () rs orientation: forward

Symbol	Name	Function Class
Rr383053	regulatory region 383053	1254 bp upstream
Rr401265	regulatory region 401265	1394 bp downstream
Rr674752	regulatory region 674752	153 bp distal
Rr674753	regulatory region 674753	1578 bp distal
Rr674754	regulatory region 674754	458 bp distal
Rr674755	regulatory region 674755	1103 bp proximal
Rr674756	regulatory region 674756	1304 bp proximal
Tssr83976	transcription start site region 83976	1419 bp downstream