rs6280404 SNP Detail

Summary

• ID
  rs6280404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127857153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGATGTGT GGTCAGGGAA TTTGCAGCCA TTGAAAGACC
  AGTAAGGGAG AAGCTTTGTG AATCTGACAG CTCAGGAAGA AAGGACCAAT TCTTCAAAAG
  Y
  CACCAACTGT TCAAATTTAT TAAAGTTAAA ATAGAGTACT CAAGTAGTTC TATACTGTTA
  CAGAAATTAA TTTTTTAGTA ATGATTTTAA AACCTCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8686258	WI_WGS_2_128996801	WI	MOUSE	f	SNP							C		T
ss37627182	NES09001680	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T		T	C	C	C	C	C
ss45213672	mCV22732972	ABI	CRAMUS_MOUSE	f	SNP		C	C				C			T
ss147549451	ENSMUSSNP617655	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6280404					SNP	C	C	C	C	C	T	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627182	NES09001680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127857153 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	313 bp downstream
Rr564632	regulatory region 564632	336 bp distal
Tssr20037	transcription start site region 20037	46 bp downstream