rs6280472 SNP Detail

Summary

• ID
  rs6280472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191568982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTAGTC AGAGCCACGG
  GCATCTGTGC AAAACCTCAG GCCAGAACAC CTCTGACCCA TGCATCCCTC TGCTTCCTCT
  CAGCAGCCAA TTGACCTTTT GTTTGAAGAC AATGTCCAAG TGGCTGCTGG GCTGACTCTG
  CAAGTGGAGA TGCCTTGGGG GTGGGGGGCA CCCAGCAGCT ACCCAGGCTG GTTCATTGTC
  Y
  AACCCTCTGA GACTCAGTTC CTCACCGGTA AACAGAACAT TAGTCCTGGA AAAGGTGAAC
  TGTGTTTAAG GGCCTAGACC AGTCCTGAGC AAATGTATTC CATGTGGCCC TGAGGAGGAT
  CCAAAAGGGC TTGGGTTATA ATGGATGGGC TCTAATAAAA TGCAAATATT TAAACTAAGG
  GGGGGGAGCA TGAGTGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8686326	WI_WGS_1_193216546	WI	MOUSE	f	SNP							T		C
ss60360513	NES15857504	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6280472					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360513	NES15857504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191568982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1227	CpG island 1227	1746 bp distal
Rr426232	regulatory region 426232	1571 bp distal
Rr426233	regulatory region 426233	1858 bp distal
Rr426234	regulatory region 426234	881 bp proximal
Rr426235	regulatory region 426235	1959 bp proximal