rs6281647 SNP Detail

Summary

• ID
  rs6281647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191569219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAGTCC TGGAAAAGGT
  GAACTGTGTT TAAGGGCCTA GACCAGTCCT GAGCAAATGT ATTCCATGTG GCCCTGAGGA
  GGATCCAAAA GGGCTTGGGT TATAATGGAT GGGCTCTAAT AAAATGCAAA TATTTAAACT
  AAGGGGGGGG AGCATGAGTG AAACCAAGAA TAAATCCAAC ATAATTGCAG TAATTACACC
  Y
  GGAGCCAAGC CTTGAGGGAG CAGAGCGCTC ACTGAGGTAA GGCAGGAGAG ACATCTCAGG
  GTGTGGCATA GGCCTTTGCT GAACCTCCGC CTGCAATGGA CCGGGCAGTA TTGTCTGGAA
  ATCTTGTTAA AATATAGATT CAATTCAACA GATGCAGGGT GGGCCAGATA ATCTGTCCTA
  ACTGCTCTAG GGTAGACTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8687504	WI_WGS_1_193216783	WI	MOUSE	f	SNP							C		T
ss60360509	NES15857508	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6281647					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360509	NES15857508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191569219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1227	CpG island 1227	1983 bp distal
Rr426232	regulatory region 426232	1808 bp distal
Rr426234	regulatory region 426234	644 bp proximal
Rr426235	regulatory region 426235	1722 bp proximal