rs6282230 SNP Detail

Summary

• ID
  rs6282230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76393654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGCAGT TATGACCCCT
  AAACAGCACA TTTGTTAACC ACCCCAATAC AATCCATTCT ACCACTAGCT ATGTTCTGTT
  CTTAAAACAC ATCATCAGTC TTGATCTCAG ACGCTAACTC TAAATCAGAA ACTCAGTTAC
  CTTAAAACAG TGCCCAGTAG GGTTCTTCAC TTGGCCTTTA AAAGTTACCA CTCTGAAGGC
  Y
  GGATGGGAAG ACAACGGTGC GTTCAAGTCT AGCCTGGGCC AAATAGCAAG ACTATCTCAA
  AAACTTACAA ACAAAACAAT GAAGCTACTA CTTCAGGTTG GTGTGGTATC TGTGTGTGTG
  CTGTTTTGTT TGTTTGAGAC AGGGTCTAAC TATGTCACTC TAACTGGTCT GGAACTCACT
  ATATAAACCA GGCTGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8688092	WI_WGS_12_71019990	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6282230					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76393654 () rs orientation: forward

Symbol	Name	Function Class
A430103D13Rik	RIKEN cDNA A430103D13 gene	1499 bp upstream
Rr257470	regulatory region 257470	1654 bp distal
Rr257471	regulatory region 257471	654 bp distal
Rr264230	regulatory region 264230	600 bp distal
Zbtb25	zinc finger and BTB domain containing 25	902 bp downstream