rs6282405 SNP Detail

Summary

• ID
  rs6282405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46990735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGAGGT TCCCTTCAAG
  GGGACAGACG CAGCTTTCAT GAATCAACTG CCCCCACAAC CTTTCACTGT ATACTTTAAG
  TAGCCATCTC TCTCAATGTG AAACAGCAGC AGCCAAAAGT TAAACTGTTC CTTCATTACT
  CAGGCTCTTC AATTTTTGCT TATCAGAGAA AGAGGACTGA AAGCTTAAGA ATCCAAGTCC
  R
  AGGCACTCGT GCTGGGGCAT GGAGGCAGGG GGATGTCTGT GTAATTAAGG TCAGCCACCT
  GGGTCTACAC AGTAAGTCCC AAATTAGCCA GAGCTACAAG AACCTGTCTC AAAAAAAAAA
  AACAAACAAA AAATAGAGAA AGAAAGGAAA GAACGTGGTG GTGGAGAGCC TATCAACCTC
  CTTCATATCT TTTACTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8688267	WI_WGS_17_45699968	WI	MOUSE	f	SNP							A		G
ss62758073	NES17351016	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6282405					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758073	NES17351016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46990735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	645 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	980 bp upstream
Rr527794	regulatory region 527794	460 bp distal
Rr527795	regulatory region 527795	181 bp proximal
Tssr5136	transcription start site region 5136	967 bp downstream
Tssr5137	transcription start site region 5137	1126 bp downstream
Tssr144870	transcription start site region 144870	1016 bp downstream
Tssr144871	transcription start site region 144871	982 bp downstream
Tssr144872	transcription start site region 144872	615 bp upstream
Tssr144873	transcription start site region 144873	1171 bp upstream
Tssr144874	transcription start site region 144874	1229 bp upstream
Tssr148364	transcription start site region 148364	1227 bp upstream
Tssr148365	transcription start site region 148365	1187 bp upstream
Tssr148366	transcription start site region 148366	1165 bp upstream
Tssr148367	transcription start site region 148367	917 bp downstream
Tssr148368	transcription start site region 148368	940 bp downstream
Tssr148369	transcription start site region 148369	955 bp downstream
Tssr148370	transcription start site region 148370	977 bp downstream
Tssr148371	transcription start site region 148371	1038 bp downstream
Tssr148372	transcription start site region 148372	1061 bp downstream