rs6282616 SNP Detail

Summary

• ID
  rs6282616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACTC TCACACACAC
  ACACACACTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCATTC
  TATCTATACC TGAAGCAGTT TCAAAGGATC TTTCACTCAG GTTTAATTTA AGACCTACTG
  TTTTTCAGAT AGAGTTCTAG ACCCTACAAA TGCAAGGTCT CCTTAAACCT GAAGGGCTTC
  K
  GTCCCCTCAG AGATAGATCA CAATGCATAA GACTTGAATA TGTAAGGAGT CTGGCATGTA
  GCTCCTTCTT CAGTTCCCTG ATGGAAACCT CAAACTTTAT CCCAAAGCCA GCAATCTGAG
  CAGCCCTTAA CCTAGAGTAA CAAGAATCTG AGGTGAGGCC TGCAGGGGAT TCTGATATAT
  TCTCTAGTTG CAGGCAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8688479	WI_WGS_1_186535927	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6282616					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151875 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1456 bp distal
Rr425383	regulatory region 425383	1201 bp proximal
Tssr10610	transcription start site region 10610	1384 bp downstream