rs6282620 SNP Detail

Summary

• ID
  rs6282620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26198009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCACCA ACATGTGAGA
  ATCAGGGAAA GTGGCCACAT GGGACACTTC CCCAATTATG CCTGGGGTTG CAGAGATGAA
  ATATAGATTT GAAAAGATGT TAACTCAGAA GTACCAGAGG GGAGTGTTTG CTAGCAGCAG
  GAAGGATTAG AACTGCCCAG GCTTTGAGCT AGTCAAGGCA TTTAAATTTT ACTGGTGTGT
  R
  TGTGTGTGTC TGTCTGTCTG TCTTTCATTT GAGAAACCAG ATAGCTCCTG GGTGAGTACA
  TGCCTGAGAC ATGTCAGGAG CACAGAGCAG GTTAGCTAAA CTCACTGCAA CATGGTCCTG
  CAAGGATATC TTTTTTTCTT GTTTCTTTCT TTTTTTTTTT TTTTCGAGAC AGGGTTTCTC
  TGTGTAGCCT TGGCTGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8688483	WI_WGS_2_26594253	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6282620					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26198009 () rs orientation: forward

Symbol	Name	Function Class
Rr372940	regulatory region 372940	within coordinates
Rr553269	regulatory region 553269	1440 bp proximal