rs6282635 SNP Detail

Summary

• ID
  rs6282635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACTATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CATTCTATCT ATACCTGAAG
  CAGTTTCAAA GGATCTTTCA CTCAGGTTTA ATTTAAGACC TACTGTTTTT CAGATAGAGT
  TCTAGACCCT ACAAATGCAA GGTCTCCTTA AACCTGAAGG GCTTCGGTCC CCTCAGAGAT
  R
  GATCACAATG CATAAGACTT GAATATGTAA GGAGTCTGGC ATGTAGCTCC TTCTTCAGTT
  CCCTGATGGA AACCTCAAAC TTTATCCCAA AGCCAGCAAT CTGAGCAGCC CTTAACCTAG
  AGTAACAAGA ATCTGAGGTG AGGCCTGCAG GGGATTCTGA TATATTCTCT AGTTGCAGGC
  AGAGTACAGG TTCACTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8688498	WI_WGS_1_186535942	WI	MOUSE	f	SNP	A	G
ss320175600	CHEV_1_187243572	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6282635					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151890 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1471 bp distal
Rr425383	regulatory region 425383	1186 bp proximal
Tssr10610	transcription start site region 10610	1399 bp downstream